1XCZ

Structure of DNA containing the beta-anomer of a carbocyclic abasic site


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1COSY, DQF-COSY, COSY45, TOCSY, NOESY, [1H-31P]HETCOR1.2 mM sample, 50 mM phosphate buffer, 50 mM NaCl, 1 mM EDTA, 99.96% D2O100% D2O6.9ambient290
22D NOESY1.2 mM sample, 50 mM phosphate buffer, 50 mM NaCl, 1 mM EDTA, 90% H2O-10% D2O90% H2O/10% D2O6.9ambient277
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsThe structures are based on a total of 400 distances between non-exchangeable protons, 26 distance restraints enforcing WC base pairs and 96 backbone dihedral restraints.X-PLOR
NMR Ensemble Information
Conformer Selection Criteriaconverging structures (<1.5A) and the least restraints violations
Conformers Calculated Total Number20
Conformers Submitted Total Number9
Representative Model1 (closest to the average)
Additional NMR Experimental Information
DetailsSeveral NOESY spectra recorded using different mixing times.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR3.85Brunger
2processingFelix98Accelrys
3data analysisFelix98Accelrys
4data analysisCurves5.1Lavery AND Sklenar
5collectionVNMR6.1Varian