1XCY

Structure of DNA containing the alpha-anomer of a carbocyclic abasic site


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1COSY, DQF-COSY, COSY45, TOCSY, NOESY, [1H-31P]HETCOR1.2 mM sample, 50 mM phosphate buffer, 50 mM NaCl, 1 mM EDTA, 99.96% D2O100% D2O6.9ambient290
22D NOESY1.2 mM sample, 50 mM phosphate buffer, 50 mM NaCl, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O6.9ambient277
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsThe structures are based on a total of 389 distances between non-exchangeable protons, 26 distance restraints enforcing WC base pairs and 96 backbone dihedral restraints.Felix
NMR Ensemble Information
Conformer Selection Criteriaconverging structures (<1.5A) and those with the least restraints violations
Conformers Calculated Total Number20
Conformers Submitted Total Number9
Representative Model1 (closest to the average)
Additional NMR Experimental Information
DetailsSeveral NOESY spectra recorded using different mixing times.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingFelix98Accelrys
2data analysisFelix98Accelrys
3collectionVNMR6.1Varian
4refinementX-PLOR3.85Brunger
5data analysisCurves5.1Lavery, Sklenar