☰ Navigation Tabs
PUTATIVE MAR1 RIBONUCLEASE FROM LEISHMANIA DONOVANI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.7 290 0.5 ul protein 10 mg/ml, 5% DMSO, 2.5% glycerol, 250 mM NaCl, 10mM HEPES pH 7.5
0.5 ul crystallization buffer 18% PEG 1000, 50 mM MES pH 5.6, 50 mM K3PO4, pH 5.7, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.94 58.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.438 α = 90 b = 147.438 β = 90 c = 147.438 γ = 90
Symmetry Space Group I 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2004-04-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9794, 0.9793, 0.8919 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 39.4 0.075 20.8 20110 10935
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.47 100 0.918 20.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.41 39.406 20135 9326 980 94.07 0.22969 0.22468 0.2137 0.27567 0.3001 RANDOM 63.738
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.727 r_dihedral_angle_3_deg 21.361 r_dihedral_angle_4_deg 20.481 r_dihedral_angle_1_deg 7.557 r_scangle_it 3.464 r_scbond_it 2.251 r_angle_refined_deg 1.97 r_mcangle_it 1.582 r_mcbond_it 0.936 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.727 r_dihedral_angle_3_deg 21.361 r_dihedral_angle_4_deg 20.481 r_dihedral_angle_1_deg 7.557 r_scangle_it 3.464 r_scbond_it 2.251 r_angle_refined_deg 1.97 r_mcangle_it 1.582 r_mcbond_it 0.936 r_nbtor_refined 0.312 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.151 r_symmetry_hbond_refined 0.13 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1517 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CNS refinement SOLVE phasing DM phasing SCALEPACK data scaling