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Structure of the Par-6 PDZ domain with a Pals1 internal ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 288 PEG 6000, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 3.08 60.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.122 α = 90 b = 63.122 β = 90 c = 99.276 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2003-08-15 M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 23.9 5889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.503 23.9 4573 217 94.05 0.21712 0.21712 0.2156 0.2198 0.25405 0.2462 RANDOM 32.579
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.24 2.12 4.24 -6.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.784 r_dihedral_angle_3_deg 14.872 r_dihedral_angle_4_deg 11.752 r_dihedral_angle_1_deg 5.387 r_angle_refined_deg 0.948 r_angle_other_deg 0.671 r_scangle_it 0.625 r_scbond_it 0.401 r_mcangle_it 0.293 r_mcbond_it 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.784 r_dihedral_angle_3_deg 14.872 r_dihedral_angle_4_deg 11.752 r_dihedral_angle_1_deg 5.387 r_angle_refined_deg 0.948 r_angle_other_deg 0.671 r_scangle_it 0.625 r_scbond_it 0.401 r_mcangle_it 0.293 r_mcbond_it 0.266 r_nbd_refined 0.185 r_symmetry_vdw_other 0.159 r_nbd_other 0.155 r_nbtor_refined 0.152 r_xyhbond_nbd_refined 0.118 r_symmetry_vdw_refined 0.087 r_nbtor_other 0.076 r_chiral_restr 0.058 r_mcbond_other 0.027 r_bond_refined_d 0.006 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_refined r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 804 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling AMoRE phasing