Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 1.1mM antifreeze protein like domain U-15N,13C; 20mM Tris-HCl buffer (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O | 90% H2O/10% D2O | 100mM NaCl | 7.0 | ambient | 298 | |
| 2 | 3D_13C-separated_NOESY | 1.1mM antifreeze protein like domain U-15N,13C; 20mM Tris-HCl buffer (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O | 90% H2O/10% D2O | 100mM NaCl | 7.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | VNMR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function,structures with the lowest energy,structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | This structure was determined using 3D NMR techniques |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VNMR | 6.1c | Varian |
| 2 | collection | NMRPipe | 21_2 | Delaglio, F. |
| 3 | data analysis | NMRView | 5.0.4 | Johnson, B. A. |
| 4 | structure solution | KUJIRA | 0.9049 | Kobayashi, N. |
| 5 | structure solution | CYANA | 2.0.17 | Guentert, P. |
| 6 | refinement | CYANA | 2.0.17 | Guentert, P. |
| 7 | refinement | OPALp | 1.4 | KORADI, R., BILLETER, M., GUNTERT, P. |
