1WSO
The solution structures of human Orexin-A
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 0.76mM orexin-A; 18mM potassium phosphate buffer | 90% H2O/10% D2O | 18mM potassium phosphate | 6.0 | ambient | 293 | |
2 | 2D NOESY | 0.76mM orexin-A; 18mM potassium phosphate buffer | 90% H2O/10% D2O | 18mM potassium phosphate | 6.0 | ambient | 293 | |
3 | DQF-COSY | 0.76mM orexin-A; 18mM potassium phosphate buffer | 90% H2O/10% D2O | 18mM potassium phosphate | 6.0 | ambient | 293 | |
4 | 2D TOCSY | 0.76mM orexin-A; 18mM potassium phosphate buffer | 99.9% D20 | 18mM potassium phosphate | 6.0 | ambient | 293 | |
5 | 2D NOESY | 0.76mM orexin-A; 18mM potassium phosphate buffer | 99.9% D20 | 18mM potassium phosphate | 6.0 | ambient | 293 | |
6 | 15N-1H-HSQC | 0.76mM orexin-A; 18mM potassium phosphate buffer | 90% H2O/10% D2O | 18mM potassium phosphate | 6.0 | ambient | 293 | |
7 | 13C-1H-HSQC | 0.76mM orexin-A; 18mM potassium phosphate buffer | 90% H2O/10% D2O | 18mM potassium phosphate | 6.0 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DRX | 600 |
3 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing torsion angle dynamics | The N- and C-termini are modified with Pyrrolidone carboxylic acid, or pyroglutamic acid, and an amide group, respectively. Two intra-molecular disulfide bonds are formed between Cys6 and Cys12, and between Cys7 and Cys14. | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
---|---|
Details | The structures were determined using 2D homonuclear and 15N, 13C natural abundance heteronuclear experiments. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.2 | Delaglio, F. |
2 | data analysis | Sparky | 3.106 | Goddard, T. D. |
3 | structure solution | CYANA | 1.0.6 | Guentert, P. |
4 | data analysis | TALOS | 2003.027.13.05 | Delaglio, F. |
5 | refinement | CYANA | 1.0.6 | Guentert, P. |