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Crystal structure of ribosome recycling factor from Mycobacterium Tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 PEG 8000, cadmium acetate, Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 50.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.499 α = 90 b = 33.388 β = 112.42 c = 61.368 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2004-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 30 98.8 0.135 11540 11392
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 95.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 20 11385 10230 1121 97.72 0.20086 0.20086 0.19659 0.2026 0.23946 0.2391 RANDOM 15.448
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.46 -0.68 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.109 r_scangle_it 3.29 r_scbond_it 1.894 r_angle_refined_deg 1.254 r_angle_other_deg 1.068 r_mcangle_it 0.962 r_mcbond_it 0.518 r_symmetry_vdw_other 0.357 r_xyhbond_nbd_refined 0.266 r_nbd_other 0.262
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.109 r_scangle_it 3.29 r_scbond_it 1.894 r_angle_refined_deg 1.254 r_angle_other_deg 1.068 r_mcangle_it 0.962 r_mcbond_it 0.518 r_symmetry_vdw_other 0.357 r_xyhbond_nbd_refined 0.266 r_nbd_other 0.262 r_symmetry_vdw_refined 0.244 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.226 r_nbtor_other 0.08 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1454 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing