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Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 53.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.01 α = 90 b = 73.37 β = 90 c = 107.22 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2004-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 0.97923, 0.97954, 0.90000 SPring-8 BL26B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 60.86 99.6 0.043 21.7 7.04 23751
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.264 7.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 19.93 22548 22527 1212 99.52 0.21995 0.21834 0.25082 0.2304 RANDOM 24.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.891 r_scangle_it 5.292 r_scbond_it 3.243 r_mcangle_it 2.333 r_angle_refined_deg 2.028 r_mcbond_it 1.348 r_angle_other_deg 0.975 r_symmetry_hbond_refined 0.534 r_symmetry_vdw_other 0.278 r_symmetry_vdw_refined 0.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.891 r_scangle_it 5.292 r_scbond_it 3.243 r_mcangle_it 2.333 r_angle_refined_deg 2.028 r_mcbond_it 1.348 r_angle_other_deg 0.975 r_symmetry_hbond_refined 0.534 r_symmetry_vdw_other 0.278 r_symmetry_vdw_refined 0.277 r_nbd_other 0.252 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.121 r_nbtor_other 0.09 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_gen_planes_other 0.008 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1338 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling SOLVE phasing