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Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.00
Crystal Properties Matthews coefficient Solvent content 3.05 59.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.291 α = 90 b = 86.025 β = 90 c = 126.587 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MSC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 29.11 78.7 0.13 6.2 2 18684 2 36.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.41 29.11 17729 955 100 0.201 0.197 0.273 RANDOM 25.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.14 1.22 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.857 r_dihedral_angle_4_deg 18.735 r_dihedral_angle_3_deg 17.543 r_dihedral_angle_1_deg 6.439 r_scangle_it 5.282 r_mcangle_it 4.099 r_mcbond_it 3.583 r_scbond_it 3.453 r_angle_refined_deg 1.404 r_angle_other_deg 0.834
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.857 r_dihedral_angle_4_deg 18.735 r_dihedral_angle_3_deg 17.543 r_dihedral_angle_1_deg 6.439 r_scangle_it 5.282 r_mcangle_it 4.099 r_mcbond_it 3.583 r_scbond_it 3.453 r_angle_refined_deg 1.404 r_angle_other_deg 0.834 r_symmetry_vdw_other 0.247 r_nbd_refined 0.206 r_nbd_other 0.179 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.139 r_symmetry_vdw_refined 0.106 r_nbtor_other 0.087 r_chiral_restr 0.078 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2834 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling DENCOR phasing