☰ Navigation Tabs
Three dimensional structure of a novel pore-forming lectin from the mushroom Laetiporus sulphureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 pH 4.50
Crystal Properties Matthews coefficient Solvent content 4.1 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.526 α = 90 b = 101.526 β = 90 c = 193.435 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 99.8 0.14 4.3 31.5 18325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 99.8 0.4 1.6 31.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.65 14.99 16567 889 98.5 0.229 0.226 0.2301 0.28 0.2792 RANDOM 42.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.96 r_angle_other_deg 2.059 r_scangle_it 1.911 r_angle_refined_deg 1.315 r_mcangle_it 1.313 r_scbond_it 1.072 r_mcbond_it 0.714 r_symmetry_hbond_refined 0.663 r_symmetry_vdw_other 0.287 r_symmetry_vdw_refined 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.96 r_angle_other_deg 2.059 r_scangle_it 1.911 r_angle_refined_deg 1.315 r_mcangle_it 1.313 r_scbond_it 1.072 r_mcbond_it 0.714 r_symmetry_hbond_refined 0.663 r_symmetry_vdw_other 0.287 r_symmetry_vdw_refined 0.266 r_nbd_other 0.237 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.165 r_nbtor_other 0.087 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2467 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALE data scaling SOLVE phasing MLPHARE phasing SHARP phasing