1W0N

Structure of uncomplexed Carbohydrate Binding Domain CBM36


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5CRYSTALS OF NATIVE CBM36 (14.9 MG/ML) WERE GROWN USING THE VAPOR DIFFUSION TECHNIQUE FROM HANGING DROPS IN 1.6 M MAGNESIUM SULFATE AND 0.1 M MES, PH 6.5
Crystal Properties
Matthews coefficientSolvent content
1.7931.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.529α = 90
b = 40.187β = 90
c = 81.2γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-3ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.825970.0612495183
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.80.84970.3732

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT0.824.3395183498794.40.1290.1290.144RANDOM8.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.43-0.31-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.873
r_dihedral_angle_4_deg21.653
r_dihedral_angle_3_deg13.065
r_dihedral_angle_1_deg7.162
r_scangle_it4.849
r_angle_other_deg3.879
r_scbond_it3.85
r_mcangle_it2.804
r_mcbond_it2.197
r_angle_refined_deg2.032
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.873
r_dihedral_angle_4_deg21.653
r_dihedral_angle_3_deg13.065
r_dihedral_angle_1_deg7.162
r_scangle_it4.849
r_angle_other_deg3.879
r_scbond_it3.85
r_mcangle_it2.804
r_mcbond_it2.197
r_angle_refined_deg2.032
r_nbd_refined0.342
r_nbtor_refined0.247
r_xyhbond_nbd_refined0.227
r_symmetry_vdw_other0.224
r_nbd_other0.211
r_symmetry_hbond_refined0.19
r_nbtor_other0.128
r_chiral_restr0.124
r_symmetry_vdw_refined0.108
r_bond_refined_d0.019
r_bond_other_d0.013
r_gen_planes_refined0.01
r_gen_planes_other0.007
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms895
Nucleic Acid Atoms
Solvent Atoms206
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling