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Complex of thrombin with designed inhibitor 7165
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OYT PDB ENTRY 1OYT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 PH 7.40
Crystal Properties Matthews coefficient Solvent content 2.76 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.9 α = 90 b = 71.4 β = 100.4 c = 72.4 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2003-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 20 82.2 0.04 26.98 7.11 43087 -3 16.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.63 83.9 0.23 8.56 6.93
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OYT 1.54 18.55 43087 2155 0.181 0.1791 0.209 0.2014 RANDOM 18.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -1.31 -1.82 1.23
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.3 c_scangle_it 2.67 c_mcangle_it 1.89 c_scbond_it 1.89 c_angle_deg 1.8 c_mcbond_it 1.26 c_improper_angle_d 1.2 c_bond_d 0.013 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.3 c_scangle_it 2.67 c_mcangle_it 1.89 c_scbond_it 1.89 c_angle_deg 1.8 c_mcbond_it 1.26 c_improper_angle_d 1.2 c_bond_d 0.013 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2296 Nucleic Acid Atoms Solvent Atoms 408 Heterogen Atoms 35
Software Software Software Name Purpose CNX refinement XDS data reduction XDS data scaling