☰ Navigation Tabs
CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR/ACT DOMAIN PROTEIN (TM0892) FROM THERMOTOGA MARITIMA AT 1.70 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.5 277 20.0% PEG-8000, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.5 277 20.0% PEG-10000, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.64 53.45 2.68 53.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 228.04 α = 90 b = 52.647 β = 100.44 c = 44.161 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2005-01-21 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC 2005-01-06 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979741, 1.019859 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 37.81 81.56 0.088 20.66 3.16 45259 29.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.76 73.13 0.278 2.45 1.96 4044
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD + MOLECULAR REPLACEMENT THROUGHOUT 1.7 37.81 43645 2336 80.4 0.24687 0.24563 0.2529 0.26992 0.2794 RANDOM 23.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.31 -0.8 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.955 r_dihedral_angle_4_deg 19.856 r_dihedral_angle_3_deg 14.383 r_dihedral_angle_1_deg 5.824 r_scangle_it 3.294 r_scbond_it 2.311 r_angle_refined_deg 1.281 r_mcangle_it 1.236 r_mcbond_it 1.12 r_angle_other_deg 0.882
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.955 r_dihedral_angle_4_deg 19.856 r_dihedral_angle_3_deg 14.383 r_dihedral_angle_1_deg 5.824 r_scangle_it 3.294 r_scbond_it 2.311 r_angle_refined_deg 1.281 r_mcangle_it 1.236 r_mcbond_it 1.12 r_angle_other_deg 0.882 r_symmetry_vdw_refined 0.336 r_symmetry_vdw_other 0.257 r_mcbond_other 0.225 r_nbd_refined 0.212 r_nbd_other 0.176 r_nbtor_refined 0.175 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.144 r_nbtor_other 0.082 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1986 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing REFMAC refinement