1VR9

CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR/ACT DOMAIN PROTEIN (TM0892) FROM THERMOTOGA MARITIMA AT 1.70 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP, NANODROP7.527720.0% PEG-8000, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
2VAPOR DIFFUSION, SITTING DROP, NANODROP7.527720.0% PEG-10000, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.6453.45
2.6853.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 228.04α = 90
b = 52.647β = 100.44
c = 44.161γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2005-01-21MSINGLE WAVELENGTH
21x-ray100CCDADSC2005-01-06MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.1ALS8.2.1
2SYNCHROTRONALS BEAMLINE 8.3.10.979741, 1.019859ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.737.8181.560.08820.663.164525929.22
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.71.7673.130.2782.451.964044

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMAD + MOLECULAR REPLACEMENTTHROUGHOUT1.737.8143645233680.40.246870.245630.26992RANDOM23.729
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.050.31-0.80.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.955
r_dihedral_angle_4_deg19.856
r_dihedral_angle_3_deg14.383
r_dihedral_angle_1_deg5.824
r_scangle_it3.294
r_scbond_it2.311
r_angle_refined_deg1.281
r_mcangle_it1.236
r_mcbond_it1.12
r_angle_other_deg0.882
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.955
r_dihedral_angle_4_deg19.856
r_dihedral_angle_3_deg14.383
r_dihedral_angle_1_deg5.824
r_scangle_it3.294
r_scbond_it2.311
r_angle_refined_deg1.281
r_mcangle_it1.236
r_mcbond_it1.12
r_angle_other_deg0.882
r_symmetry_vdw_refined0.336
r_symmetry_vdw_other0.257
r_mcbond_other0.225
r_nbd_refined0.212
r_nbd_other0.176
r_nbtor_refined0.175
r_symmetry_hbond_refined0.145
r_xyhbond_nbd_refined0.144
r_nbtor_other0.082
r_chiral_restr0.075
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1986
Nucleic Acid Atoms
Solvent Atoms242
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
REFMACrefinement