☰ Navigation Tabs
Crystal structure of Anthranilate phosphoribosyltransferase 2 (17130499) from Nostoc sp. at 1.85 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KGZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 293 20.025% PEG 3350, 0.2M Acetate_Na, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.556 α = 90 b = 47.233 β = 92.72 c = 99.376 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 99.05 98.4 0.063 12.9 3.3 52559 41.56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 99.7 0.749 1.3 2.8 3920
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1kgz 1.85 99.05 49894 2636 97.95 0.18131 0.17921 0.1867 0.2206 0.2291 RANDOM 38.689
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.25 -0.58 1.45 -2.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.868 r_dihedral_angle_4_deg 18.49 r_dihedral_angle_3_deg 15.845 r_scangle_it 8 r_dihedral_angle_1_deg 6.195 r_scbond_it 5.61 r_mcangle_it 3.556 r_mcbond_it 2.422 r_angle_refined_deg 1.569 r_angle_other_deg 0.854
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.868 r_dihedral_angle_4_deg 18.49 r_dihedral_angle_3_deg 15.845 r_scangle_it 8 r_dihedral_angle_1_deg 6.195 r_scbond_it 5.61 r_mcangle_it 3.556 r_mcbond_it 2.422 r_angle_refined_deg 1.569 r_angle_other_deg 0.854 r_mcbond_other 0.626 r_symmetry_vdw_other 0.257 r_symmetry_hbond_refined 0.257 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.213 r_nbd_other 0.174 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.096 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4806 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 14
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling