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Crystal structure of a virulence factor (cj0248) from campylobacter jejuni subsp. jejuni at 2.25 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 20.0% PEG-6000, 1.0M LiCl, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.58 51.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.141 α = 90 b = 122.09 β = 120.58 c = 96.897 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC fixed-height exit beam, toroidal focusing mirror 2004-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 61.05 97.4 0.047 11.4 2.7 56900 56.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.31 90.4 0.398 1.7 1.9 3921
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 61.04 54049 2850 97.28 0.19519 0.19312 0.199 0.23286 0.2358 RANDOM 45.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.91 -1.22 1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.608 r_dihedral_angle_4_deg 23.491 r_dihedral_angle_3_deg 15.482 r_scangle_it 6.027 r_dihedral_angle_1_deg 5.178 r_scbond_it 4.529 r_mcangle_it 2.415 r_mcbond_it 1.616 r_angle_refined_deg 1.355 r_angle_other_deg 0.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.608 r_dihedral_angle_4_deg 23.491 r_dihedral_angle_3_deg 15.482 r_scangle_it 6.027 r_dihedral_angle_1_deg 5.178 r_scbond_it 4.529 r_mcangle_it 2.415 r_mcbond_it 1.616 r_angle_refined_deg 1.355 r_angle_other_deg 0.907 r_mcbond_other 0.278 r_symmetry_vdw_other 0.256 r_nbd_refined 0.214 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.172 r_nbd_other 0.166 r_symmetry_hbond_refined 0.138 r_symmetry_vdw_refined 0.11 r_nbtor_other 0.088 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8475 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing REFMAC refinement CCP4 data scaling