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STRUCTURE OF HUMAN VASCULAR ENDOTHELIAL GROWTH FACTOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.19 α = 90 b = 59.81 β = 90 c = 77.52 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH COLLIMATOR 1995-12-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 10 97 0.041 56.5 3.6 17684
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 96 0.103 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.5 10 16942 1755 95.8 0.205 0.205 0.2073 0.297 0.2993 IN SMALL SHELLS 46.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 12.29 -32.48 20.1816
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.8 x_scangle_it 3.6 x_mcangle_it 3 x_scbond_it 2.3 x_mcbond_it 1.7 x_angle_deg 1.69 x_improper_angle_d 1.63 x_bond_d 0.013 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.8 x_scangle_it 3.6 x_mcangle_it 3 x_scbond_it 2.3 x_mcbond_it 1.7 x_angle_deg 1.69 x_improper_angle_d 1.63 x_bond_d 0.013 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3044 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms
Software Software Software Name Purpose XDS data scaling XSCALE data scaling X-PLOR model building X-PLOR refinement XDS data reduction X-PLOR phasing