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Crystal structure of Putative phosphate acetyltransferase (np_416953.1) from Escherichia coli k12 at 2.32 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 9.5 277 1.26M (NH4)2SO4, 0.2M NaCl, 0.1M CHES pH 9.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.29 62.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.307 α = 90 b = 95.307 β = 90 c = 175.512 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-08-24 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9796, 0.9794, 1.0000 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.32 28.26 99.9 0.062 13.3 5 21138 60.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.32 2.45 100 0.55 2.1 3.7 3011
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.32 28.26 20017 1085 99.74 0.1968 0.19419 0.2007 0.24746 0.2502 RANDOM 46.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 0.54 1.08 -1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.585 r_dihedral_angle_4_deg 20.243 r_dihedral_angle_3_deg 16.011 r_dihedral_angle_1_deg 8.734 r_scangle_it 3.609 r_scbond_it 2.477 r_angle_refined_deg 1.533 r_mcangle_it 1.17 r_mcbond_it 0.921 r_angle_other_deg 0.855
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.585 r_dihedral_angle_4_deg 20.243 r_dihedral_angle_3_deg 16.011 r_dihedral_angle_1_deg 8.734 r_scangle_it 3.609 r_scbond_it 2.477 r_angle_refined_deg 1.533 r_mcangle_it 1.17 r_mcbond_it 0.921 r_angle_other_deg 0.855 r_symmetry_vdw_other 0.272 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.211 r_nbd_other 0.175 r_symmetry_hbond_refined 0.174 r_nbtor_refined 0.173 r_mcbond_other 0.167 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.095 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2397 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 12
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX model building autoSHARP phasing REFMAC refinement CCP4 data scaling SHELX phasing