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CRYSTAL STRUCTURE OF A GLYCEROL UPTAKE OPERON ANTITERMINATOR-RELATED PROTEIN (TM1436) FROM THERMOTOGA MARITIMA MSB8 AT 1.65 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5.5 277 Citrate pH 5.5, 50% PEG-200, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.94 57.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.527 α = 90 b = 138.783 β = 90 c = 160.626 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 80.31 97.2 0.074 13.3 4.3 110006 33.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 82.4 0.576 1.3 2.5 6833
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 72.19 104433 5519 97.1 0.18649 0.18517 0.1982 0.21126 0.222 RANDOM 18.094
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.35 -0.84 3.19
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.002 r_dihedral_angle_1_deg 6.231 r_scbond_it 5.405 r_mcangle_it 3.341 r_mcbond_it 2.216 r_angle_refined_deg 1.598 r_angle_other_deg 0.836 r_symmetry_vdw_other 0.257 r_nbd_other 0.239 r_nbd_refined 0.214
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.002 r_dihedral_angle_1_deg 6.231 r_scbond_it 5.405 r_mcangle_it 3.341 r_mcbond_it 2.216 r_angle_refined_deg 1.598 r_angle_other_deg 0.836 r_symmetry_vdw_other 0.257 r_nbd_other 0.239 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.161 r_symmetry_vdw_refined 0.129 r_chiral_restr 0.095 r_nbtor_other 0.085 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5246 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 44
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling