☰ Navigation Tabs
Putative acetyl transferase from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.9 295 8% (v/v) MPD, 100mM magnesium chloride, 100mM sodium citrate, pH 5.9, micro batch, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 41.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.919 α = 90 b = 67.387 β = 91.55 c = 49.414 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97702 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 50 0.049 24184
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.97 95.6 0.442
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.89 49.39 21803 2360 98.3 0.21098 0.20726 0.2159 0.24419 0.2524 RANDOM 28.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 0.55 1.1 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.49 r_dihedral_angle_4_deg 16.733 r_dihedral_angle_3_deg 12.534 r_dihedral_angle_1_deg 5.362 r_scangle_it 3.127 r_mcangle_it 3.084 r_scbond_it 2.13 r_mcbond_it 2.026 r_angle_refined_deg 1.078 r_angle_other_deg 0.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.49 r_dihedral_angle_4_deg 16.733 r_dihedral_angle_3_deg 12.534 r_dihedral_angle_1_deg 5.362 r_scangle_it 3.127 r_mcangle_it 3.084 r_scbond_it 2.13 r_mcbond_it 2.026 r_angle_refined_deg 1.078 r_angle_other_deg 0.705 r_mcbond_other 0.542 r_nbd_refined 0.203 r_symmetry_vdw_other 0.201 r_symmetry_vdw_refined 0.187 r_nbtor_refined 0.18 r_nbd_other 0.164 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.096 r_nbtor_other 0.08 r_chiral_restr 0.068 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2394 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 13
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ARP/wARP model building