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Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 291 2.0M NaCl, 0.1M TRIS, pH 8.5, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.29 46.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.148 α = 90 b = 40.099 β = 122.29 c = 65.671 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2003-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 80.5 0.04 34.3 2.4 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 21.5 0.14 4.1 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SINGLE WAVELENGTH ANOMALOUS SCATTERING THROUGHOUT 1.2 55.9 63181 3374 83.4 0.166 0.165 0.1754 0.175 0.1837 RANDOM 14.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.26 1.12 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.568 r_dihedral_angle_4_deg 13.897 r_dihedral_angle_3_deg 10.971 r_sphericity_free 6.374 r_dihedral_angle_1_deg 5.951 r_scangle_it 3.701 r_sphericity_bonded 3.239 r_mcangle_it 2.792 r_scbond_it 2.514 r_mcbond_it 1.991
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.568 r_dihedral_angle_4_deg 13.897 r_dihedral_angle_3_deg 10.971 r_sphericity_free 6.374 r_dihedral_angle_1_deg 5.951 r_scangle_it 3.701 r_sphericity_bonded 3.239 r_mcangle_it 2.792 r_scbond_it 2.514 r_mcbond_it 1.991 r_mcbond_other 1.79 r_rigid_bond_restr 1.301 r_angle_refined_deg 1.298 r_angle_other_deg 0.74 r_nbd_refined 0.223 r_symmetry_vdw_other 0.206 r_nbd_other 0.166 r_symmetry_hbond_refined 0.163 r_metal_ion_refined 0.162 r_xyhbond_nbd_refined 0.094 r_nbtor_other 0.085 r_chiral_restr 0.084 r_symmetry_vdw_refined 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1843 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement ARP/wARP model building PDB_EXTRACT data extraction MolProbity model building SCA2STRUCTURE phasing