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X-ray Structure of Gene Product from Arabidopsis Thaliana At5g06450
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 Sodium Citrate, Polyethylene glycol 2000, hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.8 56.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.831 α = 90 b = 120.831 β = 90 c = 185.222 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Bent flat mirror and sagitally bent second crystal 2003-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.9792, 0.9800, 0.9641 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 35 100 0.062 29 10.6 91738
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 99.8 0.479 5.8 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 34.922 87085 4592 99.98 0.183 0.1829 0.1803 0.1812 0.2326 0.2305 RANDOM 30.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.008 -0.004 -0.008 0.011
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.029 r_dihedral_angle_1_deg 6.716 r_scbond_it 5.826 r_mcangle_it 3.569 r_mcbond_it 1.982 r_angle_refined_deg 1.777 r_nbtor_refined 0.317 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.171
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.029 r_dihedral_angle_1_deg 6.716 r_scbond_it 5.826 r_mcangle_it 3.569 r_mcbond_it 1.982 r_angle_refined_deg 1.777 r_nbtor_refined 0.317 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.138 r_bond_refined_d 0.023 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9546 Nucleic Acid Atoms Solvent Atoms 645 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing RESOLVE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling PDB_EXTRACT data extraction