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Crystal structure of a duf151 family protein (tm0160) from thermotoga maritima at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 293 10 % isopropanol, 20 % PEG 4000; 0.1 M HEPES pH7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 10 % isopropanol, 20 % PEG 4000; 0.1 M HEPES pH7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.509 α = 90 b = 51.061 β = 97.39 c = 72.974 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-06-15 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC 2003-06-15 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3 2 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 50 100 0.086 19.58 2.18 24182 42.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 92.4 0.485 1.44 1.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 32.96 23110 1214 96.5 0.201 0.198 0.2065 0.253 0.255 RANDOM 41.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.3 0.25 1.36 2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.589 r_dihedral_angle_4_deg 23.207 r_dihedral_angle_3_deg 16.655 r_dihedral_angle_1_deg 6.207 r_scangle_it 3.298 r_scbond_it 2.259 r_angle_refined_deg 1.665 r_mcangle_it 1.47 r_mcbond_it 1.079 r_angle_other_deg 0.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.589 r_dihedral_angle_4_deg 23.207 r_dihedral_angle_3_deg 16.655 r_dihedral_angle_1_deg 6.207 r_scangle_it 3.298 r_scbond_it 2.259 r_angle_refined_deg 1.665 r_mcangle_it 1.47 r_mcbond_it 1.079 r_angle_other_deg 0.813 r_symmetry_vdw_other 0.219 r_nbd_refined 0.204 r_nbd_other 0.187 r_symmetry_vdw_refined 0.115 r_chiral_restr 0.103 r_symmetry_hbond_refined 0.103 r_nbtor_other 0.089 r_xyhbond_nbd_refined 0.033 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2175 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE model building REFMAC refinement RESOLVE phasing