1VJ3

STRUCTURAL STUDIES ON BIO-ACTIVE COMPOUNDS. CRYSTAL STRUCTURE AND MOLECULAR MODELING STUDIES ON THE PNEUMOCYSTIS CARINII DIHYDROFOLATE REDUCTASE COFACTOR COMPLEX WITH TAB, A HIGHLY SELECTIVE ANTIFOLATE.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16pH 6.00
Crystal Properties
Matthews coefficientSolvent content
2.0848

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.481α = 90
b = 43.137β = 94.74
c = 61.288γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKU RAXIS IIC1998-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1897.80.0644.12.210325116.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.1896.90.1873.1

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.182113281032597.80.1924.34
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor23.6
p_scangle_it2.426
p_planar_tor2.4
p_mcangle_it2.378
p_scbond_it1.641
p_mcbond_it1.564
p_xhyhbond_nbd0.334
p_multtor_nbd0.313
p_singtor_nbd0.229
p_chiral_restr0.228
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor23.6
p_scangle_it2.426
p_planar_tor2.4
p_mcangle_it2.378
p_scbond_it1.641
p_mcbond_it1.564
p_xhyhbond_nbd0.334
p_multtor_nbd0.313
p_singtor_nbd0.229
p_chiral_restr0.228
p_planar_d0.081
p_angle_d0.065
p_bond_d0.02
p_plane_restr0.016
p_angle_deg
p_hb_or_metal_coord
p_xyhbond_nbd
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1678
Nucleic Acid Atoms
Solvent Atoms75
Heterogen Atoms94

Software

Software
Software NamePurpose
DENZOdata reduction
AMoREphasing
PROFFTrefinement