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Crystal structure of bluefin tuna hemoglobin deoxy form at pH7.5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH METHOD 7.5 293 PEG 2000, sodium phosphate, glycerol, pH 7.5, BATCH METHOD, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.766 α = 90 b = 58.637 β = 90 c = 174.414 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 DIFFRACTOMETER WEISSENBERG M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 15 80.5 0.055 11.3 57398
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 54.5 0.241
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 13.84 54267 2892 100 0.1758 0.17434 0.2023 RANDOM 30.683
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 -0.45 -0.41
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.759 r_dihedral_angle_1_deg 4.726 r_scbond_it 2.956 r_mcangle_it 1.752 r_angle_refined_deg 1.578 r_mcbond_it 0.882 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.759 r_dihedral_angle_1_deg 4.726 r_scbond_it 2.956 r_mcangle_it 1.752 r_angle_refined_deg 1.578 r_mcbond_it 0.882 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.116 r_symmetry_hbond_refined 0.062 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4462 Nucleic Acid Atoms Solvent Atoms 209 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing