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Crystal structure of tt0168 from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 MES, ammonium sulfate, PEG-MME , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.48 50.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.51 α = 90 b = 101.381 β = 90 c = 176.898 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2003-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.0 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 46.1 99.8 41062
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 97.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 46.1 36846 4116 100 0.20743 0.20377 0.24046 0.2385 RANDOM 27.061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -0.96 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.575 r_scangle_it 1.965 r_scbond_it 1.056 r_angle_refined_deg 0.923 r_mcangle_it 0.863 r_mcbond_it 0.446 r_nbd_refined 0.167 r_symmetry_vdw_refined 0.113 r_xyhbond_nbd_refined 0.085 r_symmetry_hbond_refined 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.575 r_scangle_it 1.965 r_scbond_it 1.056 r_angle_refined_deg 0.923 r_mcangle_it 0.863 r_mcbond_it 0.446 r_nbd_refined 0.167 r_symmetry_vdw_refined 0.113 r_xyhbond_nbd_refined 0.085 r_symmetry_hbond_refined 0.074 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7766 Nucleic Acid Atoms Solvent Atoms 472 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing