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Structure of P. falciparum PfPK5-Purvalanol B ligand complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.37 47.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 222.64 α = 90 b = 44.361 β = 103.19 c = 63.762 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 27 93.1 0.093 4.4 2.3 38513
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 105.41 36543 1970 92.8 0.198 0.194 0.1949 0.265 0.2596 RANDOM 37.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 0.02 1.77 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.952 r_scangle_it 4.47 r_scbond_it 2.853 r_mcangle_it 2.288 r_angle_refined_deg 1.82 r_mcbond_it 1.358 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.186 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.952 r_scangle_it 4.47 r_scbond_it 2.853 r_mcangle_it 2.288 r_angle_refined_deg 1.82 r_mcbond_it 1.358 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.186 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.127 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4309 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement