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Crystal structure of the t198a mutant of pfpk5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.61 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.29 α = 90 b = 94.653 β = 99.19 c = 133.229 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 27 97 0.098 2.3 33495
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 129.1 31806 1679 96.8 0.226 0.223 0.226 0.275 0.2803 RANDOM 32.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.58 -0.66 -1.39 -2.4
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.376 r_angle_other_deg 3.553 r_dihedral_angle_1_deg 3.261 r_scbond_it 2.66 r_mcangle_it 1.992 r_angle_refined_deg 1.41 r_mcbond_it 1.088 r_symmetry_vdw_refined 0.727 r_symmetry_vdw_other 0.573 r_symmetry_hbond_refined 0.572
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.376 r_angle_other_deg 3.553 r_dihedral_angle_1_deg 3.261 r_scbond_it 2.66 r_mcangle_it 1.992 r_angle_refined_deg 1.41 r_mcbond_it 1.088 r_symmetry_vdw_refined 0.727 r_symmetry_vdw_other 0.573 r_symmetry_hbond_refined 0.572 r_nbd_other 0.29 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.233 r_nbtor_other 0.108 r_chiral_restr 0.085 r_bond_refined_d 0.016 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4414 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement