☰ Navigation Tabs
The Initial Events in the Photocycle of Photoactive Yellow Protein: A Common Mechanism on Light Activation in Photoreceptor Proteins
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 2.25 M NH4SO4, 20 MM SODIUM PHOSPHATE PH 7, VAPOR DIFFUSION, HANGING DROP, TEMP 298K
Crystal Properties Matthews coefficient Solvent content 1.72 20
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.922 α = 90 b = 65.922 β = 90 c = 40.584 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 85 CCD ADSC CCD BENT MIRROR 2002-03-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393, 0.9796 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 98.1 0.033 15.9 5.2 159748 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 92.4 0.171 5.5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.2 40 29290 1559 98.1 0.125 0.124 0.147 RANDOM 10.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.08 -0.16 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.508 r_scangle_it 4.288 r_scbond_it 2.932 r_mcangle_it 2.234 r_angle_refined_deg 1.83 r_angle_other_deg 1.66 r_mcbond_it 1.469 r_symmetry_vdw_other 0.281 r_nbd_refined 0.279 r_symmetry_hbond_refined 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.508 r_scangle_it 4.288 r_scbond_it 2.932 r_mcangle_it 2.234 r_angle_refined_deg 1.83 r_angle_other_deg 1.66 r_mcbond_it 1.469 r_symmetry_vdw_other 0.281 r_nbd_refined 0.279 r_symmetry_hbond_refined 0.266 r_nbd_other 0.264 r_symmetry_vdw_refined 0.224 r_nbtor_other 0.176 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.114 r_bond_refined_d 0.019 r_gen_planes_other 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 970 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing