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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THIADIAZOLE INHIBITOR PNU-142372
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SLN PROTEIN COMPONENT OF STROMELYSIN-1 MODEL (J. W. BECKER, ET AL.; 1SLN)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 HANGING DROP VAPOR DIFFUSION., pH 7.0, vapor diffusion - hanging drop
Crystal Properties Matthews coefficient Solvent content 2.58 52.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.12 α = 90 b = 72.12 β = 90 c = 192.06 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR SIEMENS 1995-11-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 95 0.075 10.4 4.69 20522 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.71 49 0.239 1.83
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PROTEIN COMPONENT OF STROMELYSIN-1 MODEL (J. W. BECKER, ET AL.; 1SLN) 1.8 10 2 17046 95 0.189 0.189 19.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.1 p_staggered_tor 10.3 p_planar_tor 3.8 p_scangle_it 2.476 p_scbond_it 1.681 p_mcangle_it 1.352 p_mcbond_it 0.835 p_chiral_restr 0.275 p_xyhbond_nbd 0.209 p_multtor_nbd 0.173
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.1 p_staggered_tor 10.3 p_planar_tor 3.8 p_scangle_it 2.476 p_scbond_it 1.681 p_mcangle_it 1.352 p_mcbond_it 0.835 p_chiral_restr 0.275 p_xyhbond_nbd 0.209 p_multtor_nbd 0.173 p_singtor_nbd 0.167 p_planar_d 0.05 p_angle_d 0.04 p_plane_restr 0.026 p_bond_d 0.018 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1312 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 33
Software Software Software Name Purpose X-PLOR model building PROFFT refinement X-PLOR refinement XENGEN data reduction XENGEN data scaling X-PLOR phasing