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Ralstonia solanacearum lectin (RS-IIL) in complex with alpha-methylmannoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GZT PDB ENTRY 1GZT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 PEG 1000, TRIS BUFFER, PH 8.2
Crystal Properties Matthews coefficient Solvent content 2.23 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.132 α = 90 b = 61.707 β = 90 c = 74.788 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2003-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.13 96.5 0.05 10.5 4.3 15416
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 86.6 0.173 3.87 2.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GZT 1.7 28.17 14127 745 96.5 0.118 0.116 0.1329 0.139 0.1483 RANDOM 10.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.49 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.663 r_scangle_it 4.254 r_scbond_it 2.662 r_angle_refined_deg 1.661 r_angle_other_deg 1.592 r_mcangle_it 1.559 r_mcbond_it 0.852 r_nbd_other 0.269 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.663 r_scangle_it 4.254 r_scbond_it 2.662 r_angle_refined_deg 1.661 r_angle_other_deg 1.592 r_mcangle_it 1.559 r_mcbond_it 0.852 r_nbd_other 0.269 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.238 r_symmetry_hbond_refined 0.236 r_symmetry_vdw_other 0.225 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.112 r_nbtor_other 0.095 r_metal_ion_refined 0.055 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 817 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing