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Structure of a complex of the golgin-245 GRIP domain with Arl1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 GROWTH IN 20% PEG 3350, 0.2M TRIS-HCL PH 8.5. RESERVOIR EXCHANGED FOR 31% PEG 3350, 31% PEG 3350, 0.2M TRIS-HCL PH 8.5, FROZEN IN 31% PEG 3350, 0.2M TRIS-HCL PH 8.5.
Crystal Properties Matthews coefficient Solvent content 2.1 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.497 α = 90 b = 89.711 β = 110.69 c = 72.534 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TORROIDAL MIRROR 2003-05-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97925,0.97942,0.93928 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 67 98.7 0.062 13.9 3.6 94192
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 92.3 0.47 1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIRECT METHODS THROUGHOUT 1.7 67.42 90538 3198 98.3 0.222 0.221 0.252 0.2596 RANDOM 29.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.91 -0.39 1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.977 r_scangle_it 3.933 r_scbond_it 2.41 r_mcangle_it 1.702 r_angle_refined_deg 1.486 r_mcbond_it 0.906 r_angle_other_deg 0.83 r_symmetry_vdw_other 0.329 r_nbd_other 0.229 r_nbd_refined 0.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.977 r_scangle_it 3.933 r_scbond_it 2.41 r_mcangle_it 1.702 r_angle_refined_deg 1.486 r_mcbond_it 0.906 r_angle_other_deg 0.83 r_symmetry_vdw_other 0.329 r_nbd_other 0.229 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.136 r_symmetry_hbond_refined 0.13 r_metal_ion_refined 0.115 r_nbtor_other 0.082 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7140 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 132
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SnB phasing SHARP phasing REFMAC refinement