1UPT

Structure of a complex of the golgin-245 GRIP domain with Arl1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.5GROWTH IN 20% PEG 3350, 0.2M TRIS-HCL PH 8.5. RESERVOIR EXCHANGED FOR 31% PEG 3350, 31% PEG 3350, 0.2M TRIS-HCL PH 8.5, FROZEN IN 31% PEG 3350, 0.2M TRIS-HCL PH 8.5.
Crystal Properties
Matthew coefficientSolvent content
2.140

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.497α = 90
b = 89.711β = 110.69
c = 72.534γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDTORROIDAL MIRROR2003-05-15MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.97925,0.97942,0.93928ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.76798.70.06213.93.694192
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7992.30.4713.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIRECT METHODSTHROUGHOUT1.767.4290538319898.30.2220.2210.252RANDOM29.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.320.91-0.391.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.977
r_scangle_it3.933
r_scbond_it2.41
r_mcangle_it1.702
r_angle_refined_deg1.486
r_mcbond_it0.906
r_angle_other_deg0.83
r_symmetry_vdw_other0.329
r_nbd_other0.229
r_nbd_refined0.211
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.977
r_scangle_it3.933
r_scbond_it2.41
r_mcangle_it1.702
r_angle_refined_deg1.486
r_mcbond_it0.906
r_angle_other_deg0.83
r_symmetry_vdw_other0.329
r_nbd_other0.229
r_nbd_refined0.211
r_xyhbond_nbd_refined0.142
r_symmetry_vdw_refined0.136
r_symmetry_hbond_refined0.13
r_metal_ion_refined0.115
r_nbtor_other0.082
r_chiral_restr0.08
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_4_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbtor_refined
r_mcbond_other
r_metal_ion_other
r_mcangle_other
r_dihedral_angle_3_deg
r_scbond_other
r_dihedral_angle_2_deg
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7140
Nucleic Acid Atoms
Solvent Atoms270
Heterogen Atoms132

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SnBphasing
SHARPphasing
REFMACrefinement