☰ Navigation Tabs
Crystal Structure of APC36109 from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295 Calcium Acetate, MES, isopropanol, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 42.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.781 α = 90 b = 64.54 β = 90 c = 29.092 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirror 2003-12-12 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD SBC-2 mirror 2004-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 1.03320 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 40 92.2 0.042 16.3 8.5 11072 10761
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.66 67.4 0.192 6.7 4.5 760
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 36.79 9481 9481 1030 90.3 0.2104 0.21045 0.2052 0.2025 0.25972 0.2561 RANDOM 17.514
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.07 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.575 r_dihedral_angle_4_deg 25.454 r_dihedral_angle_3_deg 11.636 r_dihedral_angle_1_deg 4.624 r_scangle_it 4.297 r_scbond_it 2.649 r_mcangle_it 1.793 r_angle_refined_deg 1.295 r_mcbond_it 1.087 r_symmetry_vdw_refined 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.575 r_dihedral_angle_4_deg 25.454 r_dihedral_angle_3_deg 11.636 r_dihedral_angle_1_deg 4.624 r_scangle_it 4.297 r_scbond_it 2.649 r_mcangle_it 1.793 r_angle_refined_deg 1.295 r_mcbond_it 1.087 r_symmetry_vdw_refined 0.34 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 647 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing