☰ Navigation Tabs
Crystal Structure analysis of rat m-calpain mutant Lys10 Thr
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 298 PEG 6000, MES, sodium chloride, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.658 α = 90 b = 156.52 β = 95.39 c = 64.227 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH Osmic 1998-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5412
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.63 25 95 27000 25795 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.63 2.7 90
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.86 25 27000 25795 1373 90.09 0.19605 0.19144 0.28333 RANDOM 55.171
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.25 0.31 3.82 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.543 r_scangle_it 9.235 r_scbond_it 6.075 r_mcangle_it 4.329 r_angle_refined_deg 3.891 r_mcbond_it 2.492 r_angle_other_deg 1.792 r_nbd_refined 0.319 r_symmetry_vdw_other 0.309 r_nbd_other 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.543 r_scangle_it 9.235 r_scbond_it 6.075 r_mcangle_it 4.329 r_angle_refined_deg 3.891 r_mcbond_it 2.492 r_angle_other_deg 1.792 r_nbd_refined 0.319 r_symmetry_vdw_other 0.309 r_nbd_other 0.301 r_symmetry_vdw_refined 0.296 r_xyhbond_nbd_refined 0.293 r_chiral_restr 0.253 r_symmetry_hbond_refined 0.228 r_nbtor_other 0.133 r_bond_refined_d 0.064 r_gen_planes_other 0.032 r_gen_planes_refined 0.024 r_bond_other_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6407 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing