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Crystal Structure of the PH Domain of SKAP-Hom with 8 Vector-derived N-terminal Residues
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 Ammonium Sulfate, Sodium Citrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.75 α = 90 b = 78.75 β = 90 c = 130.123 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2003-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.916 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 95.2 0.072 19.6 7.7 12365 11889 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 97.7 0.429 2 797
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.9 30 12365 11768 596 98.99 0.22686 0.22585 0.2207 0.246 0.2495 RANDOM 48.919
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.98 -0.49 -0.98 1.47
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.673 r_dihedral_angle_1_deg 6.493 r_scbond_it 4.295 r_mcangle_it 3.221 r_angle_refined_deg 2.011 r_mcbond_it 1.805 r_angle_other_deg 0.933 r_symmetry_vdw_other 0.3 r_xyhbond_nbd_refined 0.299 r_nbd_other 0.262
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.673 r_dihedral_angle_1_deg 6.493 r_scbond_it 4.295 r_mcangle_it 3.221 r_angle_refined_deg 2.011 r_mcbond_it 1.805 r_angle_other_deg 0.933 r_symmetry_vdw_other 0.3 r_xyhbond_nbd_refined 0.299 r_nbd_other 0.262 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.16 r_chiral_restr 0.157 r_symmetry_vdw_refined 0.099 r_nbtor_other 0.097 r_bond_refined_d 0.031 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 977 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing