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Solution structure of rat Kalirin N-terminal SH3 domain
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
HNHA
0.4 mM U-15N protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
2
HNHB
0.4 mM U-15N protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
3
3D HN(COCA)CB
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
4
3D_C(CO)NH-TOCSY
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
5
3D_15N_ NOESY-HSQC
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
6
3D_13C_HSQC-NOESY
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
7
3D HNCACB
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
8
HC(CO)NH-TOCSY
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
9
HCCH-COSY
1 mM U-15N,13C protein, 50 mM HEPES, 150 mM NaCl, 1 mM dithiotheitol
92.5% H2O, 7.5% D2O
200 mM
6.4
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
INOVA
500
2
Varian
INOVA
600
NMR Refinement
Method
Details
Software
Torsion angle dynamics and simulated annealing
The structure is based on a total of 1017 restraints, with 893 NOE-derived distance constraints, 102 dihedral angle restraints, and 22 hydrogen bond restraints.
DYANA
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
structure solution
DYANA
1.5
Guntert, P., Mumenthaler, C., and Wuthrich, K.
2
structure solution
CYANA
1.0.0
Guntert,P.,
3
refinement
X-PLOR
3.851
Brunger, A.T.
4
processing
NMRPipe
2.3
Delaglio,F., Grzesiek,S., Vuister,G.W., Zhu,G., Pfeifer,J., and Bax,A.
5
data analysis
XEASY
1.4
Bartels,C., Xia,T., Billeter,M., Guntert,P., and Wuthrich,K.