1U1V

Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62920.1M Na-Citrate, 0.2M Ammonium Sulphate, 10% (w/v) PEG 3350, pH 5.6, temperature 292K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.1943.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.26α = 90
b = 56.26β = 90
c = 156.4γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-02-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72098.20.07527.420.6319653196522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.891.10.2689.815.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.719.2130304163398.410.13090.129670.15338RANDOM13.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.210.10.21-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.106
r_scangle_it5.044
r_scbond_it3.16
r_mcangle_it1.765
r_angle_refined_deg1.562
r_mcbond_it0.963
r_angle_other_deg0.918
r_symmetry_vdw_other0.355
r_nbd_other0.257
r_symmetry_hbond_refined0.227
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.106
r_scangle_it5.044
r_scbond_it3.16
r_mcangle_it1.765
r_angle_refined_deg1.562
r_mcbond_it0.963
r_angle_other_deg0.918
r_symmetry_vdw_other0.355
r_nbd_other0.257
r_symmetry_hbond_refined0.227
r_symmetry_vdw_refined0.217
r_xyhbond_nbd_refined0.204
r_nbd_refined0.2
r_chiral_restr0.106
r_nbtor_other0.082
r_bond_refined_d0.025
r_gen_planes_other0.019
r_gen_planes_refined0.013
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2119
Nucleic Acid Atoms
Solvent Atoms331
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
SHELXDphasing