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Structure of e. coli uridine phosphorylase complexed to 5(phenylseleno)acyclouridine (PSAU)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 295 PEG 4000, MES, GLYCEROL, PH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.41 48.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.076 α = 90 b = 125.69 β = 90 c = 140.899 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 8-BM 0.9790 APS 8-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.1 108334 108334
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 94.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.001 48.8 94774 94774 10622 97.33 0.21351 0.21351 0.21113 0.23452 0.2953 RANDOM 12.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.73 0.23 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.773 r_angle_refined_deg 0.892 r_scangle_it 0.657 r_scbond_it 0.386 r_mcangle_it 0.24 r_nbd_refined 0.163 r_mcbond_it 0.126 r_symmetry_vdw_refined 0.116 r_xyhbond_nbd_refined 0.092 r_symmetry_hbond_refined 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.773 r_angle_refined_deg 0.892 r_scangle_it 0.657 r_scbond_it 0.386 r_mcangle_it 0.24 r_nbd_refined 0.163 r_mcbond_it 0.126 r_symmetry_vdw_refined 0.116 r_xyhbond_nbd_refined 0.092 r_symmetry_hbond_refined 0.087 r_chiral_restr 0.06 r_bond_refined_d 0.005 r_metal_ion_refined 0.003 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11273 Nucleic Acid Atoms Solvent Atoms 527 Heterogen Atoms 153
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement MOSFLM data reduction CNS phasing