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Aquifex aeolicus amylomaltase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Thermus thermophilus amylomaltase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2-methyl-2,4-pentanediol, ammonium sulfate, Tris/HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.745 α = 90 b = 156.745 β = 90 c = 169.161 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Sagitally focusing Ge220 and multilayer 2004-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 91.7 0.059 75895 75895
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 96 0.727
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Thermus thermophilus amylomaltase 2.15 15 63203 63203 3358 99.83 0.21608 0.21608 0.21469 0.2583 0.24256 0.2697 RANDOM 35.124
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 0.63 1.26 -1.88
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.546 r_scbond_it 7.901 r_dihedral_angle_1_deg 7.238 r_mcangle_it 5.469 r_mcbond_it 3.836 r_angle_other_deg 0.711 r_angle_refined_deg 0.686 r_nbd_other 0.237 r_symmetry_vdw_other 0.226 r_nbd_refined 0.183
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.546 r_scbond_it 7.901 r_dihedral_angle_1_deg 7.238 r_mcangle_it 5.469 r_mcbond_it 3.836 r_angle_other_deg 0.711 r_angle_refined_deg 0.686 r_nbd_other 0.237 r_symmetry_vdw_other 0.226 r_nbd_refined 0.183 r_symmetry_vdw_refined 0.163 r_symmetry_hbond_refined 0.122 r_xyhbond_nbd_refined 0.093 r_nbtor_other 0.087 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_bond_other_d 0.006 r_gen_planes_refined 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8290 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing