1TYK
SOLUTION STRUCTURE OF A TOXIN FROM THE TARANTULA, GRAMMOSTOLA SPATULATA, WHICH INHIBITS MECHANOSENSITIVE ION CHANNELS
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2 MM NATURAL ABUNDANCE GSMTX4 | H2O | 1 mM NACL | 4.5 | AMBIENT | 278 | |
2 | DQF-COSY | 2 MM NATURAL ABUNDANCE GSMTX4 | H2O | 1 mM NACL | 4.5 | AMBIENT | 278 | |
3 | E-COSY | 2 MM NATURAL ABUNDANCE GSMTX4 | H2O | 1 mM NACL | 4.5 | AMBIENT | 278 | |
4 | 2D TOCSY | 2 MM NATURAL ABUNDANCE GSMTX4 | H2O | 1 mM NACL | 4.5 | AMBIENT | 278 | |
5 | 1H-13C-HSQC | 2 MM NATURAL ABUNDANCE GSMTX4 | H2O | 1 mM NACL | 4.5 | AMBIENT | 278 | |
6 | 1H-15N-HSQC | 2 MM NATURAL ABUNDANCE GSMTX4 | H2O | 1 mM NACL | 4.5 | AMBIENT | 278 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
DISTANCE GEOMETRY, SIMULATED ANNEALING, RAMACHANDRAN REFINEMENT | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | H-D EXCHANGE USING 2D TOCSY FOLLOWING RESUSPENSION OF LYOPHILIZED PROTEIN IN 100% D2O |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.851 | BRUNGER |
2 | structure solution | Felix | 2.2 | |
3 | structure solution | NMRPipe | 2.1 | Delaglio |
4 | structure solution | Sparky | 3.95 | Goddard |
5 | structure solution | CNS | 2.1 | BRUNGER |