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Structure of glycerol-3-phosphate dehydrogenase from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 282 ammonium sulfate, dioxane, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 282K
Crystal Properties Matthews coefficient Solvent content 2.26 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.223 α = 90 b = 67.586 β = 106.54 c = 81.156 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MARRESEARCH 2003-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 17 63641
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.7 16.98 63641 3438 100 0.1515 0.14931 0.1634 0.1938 RANDOM 17.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 -0.42 -0.03 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.209 r_scangle_it 4.958 r_scbond_it 3.14 r_mcangle_it 1.844 r_angle_refined_deg 1.641 r_mcbond_it 0.99 r_angle_other_deg 0.894 r_symmetry_vdw_other 0.366 r_symmetry_vdw_refined 0.254 r_nbd_other 0.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.209 r_scangle_it 4.958 r_scbond_it 3.14 r_mcangle_it 1.844 r_angle_refined_deg 1.641 r_mcbond_it 0.99 r_angle_other_deg 0.894 r_symmetry_vdw_other 0.366 r_symmetry_vdw_refined 0.254 r_nbd_other 0.246 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.195 r_symmetry_hbond_refined 0.185 r_chiral_restr 0.111 r_nbtor_other 0.084 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5172 Nucleic Acid Atoms Solvent Atoms 753 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing