NMR structure of the pheromone binding protein from Antheraea polyphemus at acidic pH
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 1MM APOLPBP U-15N,13C, 50MM PHOSPHATE BUFFER, 1MM EDTA, 0.1% NAN3 | 95% H2O/5% D2O | 50mM phosphate | 5.2 | ambient | 308 | |
| 2 | 3D_13C-separated_NOESY | 1MM APOLPBP U-15N,13C, 50MM PHOSPHATE BUFFER, 1MM EDTA, 0.1% NAN3 | 95% H2O/5% D2O | 50mM phosphate | 5.2 | ambient | 308 | |
| 3 | 3D_13C-separated_NOESY | 1MM APOLPBP U-15N,13C, 50MM PHOSPHATE BUFFER, 1MM EDTA, 0.1% NAN3 | 95% H2O/5% D2O | 50mM phosphate | 5.2 | ambient | 308 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DMX | 600 |
| 2 | Bruker | DMX | 750 |
| 3 | Bruker | DRX | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics, simulated annealing | 1469 NOE-derived distance constraints, 272 dihedral angle restraints, 110 distance restraints from hydrogen bonds | NMRPipe |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 500 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Additional NMR Experimental Information | |
|---|---|
| Details | CARRIER FREQUENCIES in 13C SEPARATED NOESY EXPERIMENTS: 43ppm and 125ppm |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 2.2 | |
| 2 | data analysis | NMRView | 5.0.4 | |
| 3 | structure solution | CYANA | 1.0.6 | |
| 4 | refinement | CYANA | 1.0.6 | Guntert, P. |














