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Solution structure of the ubiquitin-like domain of human DC-UBP from dendritic cells
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 1.2mM ubiquitin-like domain of DC-UBP ,10mM NaAc, 100mM NaCl, 5mM DTT, 0.02% sodium azide 92% H2O, 8% D2O 5.6 298 2 3D_13C-separated_NOESY 1.2mM ubiquitin-like domain of DC-UBP ,10mM NaAc, 100mM NaCl, 5mM DTT, 0.02% sodium azide D2O 5.6 298 3 HNHA 1.2mM ubiquitin-like domain of DC-UBP ,10mM NaAc, 100mM NaCl, 5mM DTT, 0.02% sodium azide 92% H2O, 8% D2O 5.6 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics the structures are based on 901 NOE-derived distance constraints,83 dihedral angle restraints,60 distance restraints from hydrogen bonds. XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 150 Conformers Submitted Total Number 15 Representative Model 15 (minimized average structure)
Additional NMR Experimental Information Details The structure was determined using triple-resonance NMR spectroscopy
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR Varian 2 processing NMRPipe Frank Delaglio 3 data analysis NMRView 5.0 Bruce Johnson 4 refinement CNS 1.1 A.T.Brunger et al. 5 refinement ARIA 1.2 Jens Linge et al.