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Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 296 sodium malonate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.51 50.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.89 α = 90 b = 90.89 β = 90 c = 49.476 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2003-10-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9795, 0.9797, 0.9117, 0.99 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 20 96.4 0.045 0.045 8.5 6.2 9416 8963 1 1 56.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.39 96.4 0.168 0.168 4 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.27 20 4 9416 8963 453 94.35 0.196 0.19587 0.1937 0.24043 0.2891 RANDOM 57.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.81 1.81 -3.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.856 r_dihedral_angle_4_deg 18.991 r_dihedral_angle_3_deg 18.186 r_dihedral_angle_1_deg 5.696 r_scangle_it 4.461 r_scbond_it 2.903 r_mcangle_it 1.593 r_mcbond_it 1.489 r_angle_refined_deg 1.334 r_angle_other_deg 0.676
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.856 r_dihedral_angle_4_deg 18.991 r_dihedral_angle_3_deg 18.186 r_dihedral_angle_1_deg 5.696 r_scangle_it 4.461 r_scbond_it 2.903 r_mcangle_it 1.593 r_mcbond_it 1.489 r_angle_refined_deg 1.334 r_angle_other_deg 0.676 r_symmetry_vdw_refined 0.373 r_symmetry_vdw_other 0.297 r_mcbond_other 0.25 r_nbd_refined 0.221 r_nbd_other 0.22 r_xyhbond_nbd_refined 0.191 r_symmetry_hbond_refined 0.175 r_nbtor_other 0.089 r_chiral_restr 0.073 r_xyhbond_nbd_other 0.038 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1452 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling PHENIX phasing SHARP phasing RESOLVE phasing