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EXTRACELLULAR DOMAIN OF HUMAN TISSUE FACTOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BOY C ALPHA COORDINATES OF PDB ENTRY 1BOY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 278 CRYSTAL CAN BE GROWN FROM 20MM PHOSPHATE BUFFER, PH 6.5, AT A 40MG/ML PROTEIN CONCENTRATION. THE CRYSTALS USED FOR DIFFRACTION STUDIES WERE IN FACT CRYSTALLIZED UNEXPECTEDLY IN 2 DAYS IN AN NMR TUBE CONTAINING A SOLUTION OF APPROXIMATELY 3.5MM OF UNIFORMLY 15N-ENRICHED (~99 ATOM%) TISSUE FACTOR (AT ~85 MG/ML) IN 20MM KNA2PO4, 0.02%NAN3, 10% D2O AND 90% H2O, PH 7.0 AT 5 DEGREE., temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.9 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.393 α = 90 b = 85.828 β = 90 c = 112.901 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 297 AREA DETECTOR SIEMENS COLLIMATOR 1994-12-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ELLIOTT GX-18
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 19 90 0.073 21 2.4 26432 50.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.27 2.42 52.6 0.436 1.5 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MULTIPLE ISOMORPHOUS REPLACEMENT + MOLECULAR REPLACEMENT THROUGHOUT C ALPHA COORDINATES OF PDB ENTRY 1BOY 2.4 8 20860 2038 85.6 0.217 0.217 0.297 RANDOM 51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.49 -0.39 1.88
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.1 x_scangle_it 10.32 x_mcangle_it 6.91 x_scbond_it 6.83 x_mcbond_it 4.28 x_angle_deg 1.8 x_improper_angle_d 1.55 x_bond_d 0.013 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.1 x_scangle_it 10.32 x_mcangle_it 6.91 x_scbond_it 6.83 x_mcbond_it 4.28 x_angle_deg 1.8 x_improper_angle_d 1.55 x_bond_d 0.013 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3089 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms
Software Software Software Name Purpose XENGEN data collection XENGEN data reduction AMoRE phasing PHASES phasing XTALVIEW refinement X-PLOR refinement XENGEN data scaling