X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5277PEG 3000, sodium chloride, sodium phosphate-citrate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.5251.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.411α = 90
b = 96.411β = 90
c = 79.026γ = 120
Symmetry
Space GroupP 62

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDADSC QUANTUM 2102002-12-07MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.0, 1.282927, 1.283302, 1.169662ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.184.5199.350.0478.210.92308123081-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.2499.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.184.512308123081122799.350.203590.201640.24125RANDOM35.536
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.29-0.65-1.291.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.603
r_scangle_it3.211
r_scbond_it2.116
r_angle_refined_deg1.421
r_mcangle_it1.278
r_angle_other_deg1.152
r_symmetry_vdw_refined0.664
r_mcbond_it0.656
r_symmetry_hbond_refined0.551
r_symmetry_vdw_other0.412
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.603
r_scangle_it3.211
r_scbond_it2.116
r_angle_refined_deg1.421
r_mcangle_it1.278
r_angle_other_deg1.152
r_symmetry_vdw_refined0.664
r_mcbond_it0.656
r_symmetry_hbond_refined0.551
r_symmetry_vdw_other0.412
r_metal_ion_refined0.295
r_nbd_other0.229
r_nbd_refined0.221
r_xyhbond_nbd_refined0.155
r_nbtor_other0.088
r_chiral_restr0.082
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_gen_planes_other0.004
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2444
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
ELVESdata scaling
CNXphasing