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Crystal Structure of the Shwachman-Bodian-Diamond Syndrome Protein Orthologue from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 297 PEG 8000, CHES, DTT, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 1 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.668 α = 75.87 b = 44.448 β = 85.61 c = 54.72 γ = 69.49
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-01-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97920, 0.979289, 0.891971 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 52.71 22129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 52.7 2 20479 1095 95.06 0.255 0.21358 0.2117 0.224 0.2492 0.2701 RANDOM 43.951
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 0.53 -0.1 1.67 -2.85 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.311 r_scangle_it 6.342 r_scbond_it 3.704 r_mcangle_it 2.418 r_angle_refined_deg 1.761 r_mcbond_it 1.319 r_angle_other_deg 0.889 r_symmetry_vdw_other 0.332 r_nbd_other 0.246 r_symmetry_vdw_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.311 r_scangle_it 6.342 r_scbond_it 3.704 r_mcangle_it 2.418 r_angle_refined_deg 1.761 r_mcbond_it 1.319 r_angle_other_deg 0.889 r_symmetry_vdw_other 0.332 r_nbd_other 0.246 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.202 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.105 r_nbtor_other 0.089 r_bond_refined_d 0.024 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1838 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing