Experiment: 1T92

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.2		HEPES, ammonium sulfate, isopropanol, sodium azide, pH 7.2, VAPOR DIFFUSION, HANGING DROP, SEEDING, temperature 100.0K

Crystal Properties
Matthews coefficient	Solvent content
2.97	58.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 85.395	α = 90
b = 85.395	β = 90
c = 145.7205	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	MARRESEARCH		2002-09-27	M	SINGLE WAVELENGTH
2	1	x-ray	100	CCD	MARRESEARCH		2002-11-14	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	SCHNEIDER	1.5418
2	SYNCHROTRON	SLS BEAMLINE X06SA	0.9196	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	1.6	50	96.2	0.128	19.27	25.14	42126	40533		-3	28.98

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.6	1.65	99.7		0.52	4.2	8.6	3644

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	1.6	50	42126	40533	2037	96.2	0.169	0.169	0.167	0.17	0.198	0.2	RANDOM	29.427

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.21	-0.11		-0.21		0.32

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.035
r_mcangle_it	5.233
r_mcbond_it	3.743
r_scangle_it	3.076
r_scbond_it	2.142
r_angle_refined_deg	1.422
r_symmetry_hbond_refined	0.216
r_nbd_refined	0.198
r_symmetry_vdw_refined	0.154
r_xyhbond_nbd_refined	0.142

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.035
r_mcangle_it	5.233
r_mcbond_it	3.743
r_scangle_it	3.076
r_scbond_it	2.142
r_angle_refined_deg	1.422
r_symmetry_hbond_refined	0.216
r_nbd_refined	0.198
r_symmetry_vdw_refined	0.154
r_xyhbond_nbd_refined	0.142
r_chiral_restr	0.105
r_metal_ion_refined	0.059
r_bond_refined_d	0.012
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1686
Nucleic Acid Atoms
Solvent Atoms	257
Heterogen Atoms	1

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
SHELXD	phasing
SHELXE	model building

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.