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r106g kdo8ps with pep and a5p
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FWW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 277 PEG, Na-acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.748 50.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.375 α = 90 b = 84.375 β = 90 c = 160.459 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 54.02 96.6 0.095 4.5 9.12 62521 60408 1 23.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1FWW 1.8 54.02 62027 58464 5952 94.3 0.197 0.1967 0.242 0.2403 random 34.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.05 3.05 3.05 -6.09
RMS Deviations Key Refinement Restraint Deviation x_torsion_deg 22.6 x_angle_deg 1.5 x_bond_d 0.009 x_torsion_impr_deg
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4029 Nucleic Acid Atoms Solvent Atoms 438 Heterogen Atoms 41
Software Software Software Name Purpose CNS refinement CrystalClear data reduction d*TREK data scaling CNS phasing