1T6E

Crystal Structure of the Triticum aestivum xylanase inhibitor I


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62930.15 M ammonium sulphate, 0.1 M sodium acetate buffer, 23 % PEG4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4449.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.259α = 90
b = 66.722β = 90
c = 106.063γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHbent mirror2002-05-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.811EMBL/DESY, HamburgX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.73040019353941.412
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7399.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7303602336023393999.410.185350.182210.21391RANDOM21.662
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.8-0.82-0.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.612
r_scangle_it3.648
r_scbond_it2.212
r_mcangle_it1.496
r_angle_refined_deg1.46
r_angle_other_deg0.819
r_mcbond_it0.819
r_symmetry_vdw_other0.253
r_nbd_other0.251
r_nbd_refined0.199
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.612
r_scangle_it3.648
r_scbond_it2.212
r_mcangle_it1.496
r_angle_refined_deg1.46
r_angle_other_deg0.819
r_mcbond_it0.819
r_symmetry_vdw_other0.253
r_nbd_other0.251
r_nbd_refined0.199
r_xyhbond_nbd_refined0.161
r_symmetry_hbond_refined0.136
r_symmetry_vdw_refined0.12
r_chiral_restr0.088
r_nbtor_other0.084
r_bond_refined_d0.013
r_gen_planes_other0.01
r_gen_planes_refined0.008
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2595
Nucleic Acid Atoms
Solvent Atoms318
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing