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Crystal structure of the DNA repair protein UvrB point mutant Y96A revealing a novel fold for domain 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEG 6000, Tris, ZnCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.47 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.815 α = 90 b = 150.815 β = 90 c = 159.832 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.1 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 61397
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 25 61362 3277 99.93 0.23252 0.22962 0.2286 0.28674 RANDOM 36.744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.82 0.91 1.82 -2.73
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.522 r_dihedral_angle_1_deg 3.584 r_scbond_it 2.629 r_angle_refined_deg 1.868 r_mcangle_it 1.735 r_mcbond_it 0.899 r_nbd_refined 0.239 r_symmetry_vdw_refined 0.208 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.133
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.522 r_dihedral_angle_1_deg 3.584 r_scbond_it 2.629 r_angle_refined_deg 1.868 r_mcangle_it 1.735 r_mcbond_it 0.899 r_nbd_refined 0.239 r_symmetry_vdw_refined 0.208 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.13 r_bond_refined_d 0.019 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9612 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling COMO phasing